`gerp` R Package

Martin Frigaard
Last updated on Dec 14, 2023 packages
Code

The gerp package is based on the excellent advice in the paper, Good Enough Practices for Scientific Computing by Wilson et al.

The goal of gerp is to setup your project files and folders in a structure similar to the one outlined in the paper above (and like the folder tree below):

|-- CITATION
|-- README
|-- LICENSE
|-- requirements.txt
|-- data
|   -- birds_count_table.csv
|-- doc
|   -- notebook.md
|   -- manuscript.md
|   -- changelog.txt
|-- results
|   -- summarized_results.csv
|-- src
|   -- sightings_analysis.py
|   -- runall.py

gerp creates the format below using the following lines of code:

# install.packages("pak")
pak::pak("mjfrigaard/gerp")
library(gerp)
gerp::ger_proj()


├── CITATION
├── LICENSE
├── README.Rmd
├── code
│   ├── 01-import.R
│   ├── 02-tidy.R
│   ├── 03-wrangle.R
│   ├── 04-visualize.R
│   ├── 05-model.R
│   ├── 06-communicate.R
│   └── runall.R
├── data
│   ├── README.md
│   └── raw
├── docs
│   ├── changelog.txt
│   ├── manuscript.Rmd
│   └── notebook.Rmd
├── my_project.Rproj
├── requirements.txt
└── results
    ├── figures
    ├── manuscript
    └── tables

Package website

Here is a link for the package website I built using the phenomenal pkgdown package.

Feel free to check it out and leave comments!

Cheers!

packages

Related